Nucleic resources

Also about the topics: Acid Sequence and Biotechnology.

ModelGenerator and ModelInspector
Methods for generation and recognition of models for regulatory regions.
Mutational Spectrum AnalysisMSA
Analysis of a mutational spectra through an algorithm based on the SEM subclass approach (Simulation, Expectation, Maximization).
A program for the generation of models for regulatory regions in DNA sequences, from the National Research Center for Environment and Health.
Database of Expressed Sequence Tags (dbEST)
Sequence data and other information on 'single-pass' cDNA sequences, or expressed sequence tags, from a number of organisms.
Comparative Sequence Analysis
Tool to test DNA sequence for sequencing errors. The first three methods are based on homology searches whereas the last is a neuronal net that considers codon usage and other features.
Screens DNA sequences in fasta format against a library of repetitive elements and returns a masked query sequence ready for database searches as well as a table annotating the masked regions.
Database of Sequence Tagged Sites (dbSTS)
Provider of sequence and mapping data on short genomic landmark sequences or sequence tagged sites. Also includes detailed information about the contributors, experimental conditions and genetic map locations.
Abberrant Splicing Database
Compilation of aberrant splicing phenomena.
Free on-line tool to help restriction map nucleotide sequences.
Electronic PCR (Find Putative Map Locations of a Query Sequence)
Online tool that allows sequence tagged sites to be detected from a database of DNA sequences, potentially allowing their map locations to be determined.
MatInd and MatInspector
Tools for detection of consensus matches in nucleotide sequence data.
Database of sequence contexts about the stop and start codons of many species found in GenBank.
Genetic Information Research Institute
The CENSOR web server allows users to have query sequences aligned against a reference collection of human, rodent, or plant repeats
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